HsaALTA1058282-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000230453 | ANKRD18B
Description
ankyrin repeat domain 18B [Source:HGNC Symbol;Acc:HGNC:23644]
Coordinates
chr9:33541147-33543255:+
Coord C1 exon
chr9:33541147-33541227
Coord A exon
NA
Coord C2 exon
chr9:33543185-33543255
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACATATGGATTTGTCAGCAGAAC
3' ss Score
3.9
Exon sequences
Seq C1 exon
AAACAGCAGCTATGAAGCCTGAAAATTTGAAAAAAAGAAAAAAAAGAAAAAAATTGAAAAAAAGAAAAGAAGGTGCAAAAG
Seq A exon
NA
Seq C2 exon
AACACAACTTAAAAGTGGCTTCAGAGGAAAAGCAAGAAAGGCTTGAAAGAAGTGAAAATAAACAGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230453-13-16,13-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGAAGCCTGAAAATTTGAAAA
R:
TGCTTTTCCTCTGAAGCCACT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains