HsaALTA1059193-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000237412 | PRSS56
Description
protease, serine 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr2:232523416-232523945:+
Coord C1 exon
chr2:232523416-232523578
Coord A exon
chr2:232523769-232523771
Coord C2 exon
chr2:232523772-232523945
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
GACCCCTGTCCCGCCCGCAGCAG
3' ss Score
8.53
Exon sequences
Seq C1 exon
GGTGACTCGGGAGGCCCCCTGACCTGTTCTGAGCCTGGCCCCCGCCCTAGAGAGGTCCTGTTCGGAGTCACCTCCTGGGGGGACGGCTGCGGGGAGCCAGGGAAGCCCGGGGTCTACACCCGCGTGGCAGTGTTCAAGGACTGGCTCCAGGAGCAGATGAGCG
Seq A exon
CAG
Seq C2 exon
CCTCCTCCAGCCGCGAGCCCAGCTGCAGGGAGCTTCTGGCCTGGGACCCCCCCCAGGAGCTGCAGGCAGACGCCGCCCGGCTCTGCGCCTTCTATGCCCGCCTGTGCCCGGGGTCCCAGGGCGCCTGTGCGCGCCTGGCGCACCAGCAGTGCCTGCAGCGCCGGCGGCGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237412-11-11,11-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(21.1=87.3)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTTCAAGGACTGGCTCC
R:
GTCTGCCTGCAGCTCCTG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains