HsaALTA1059264-1/5 @ hg38
Alternative 3'ss
Gene
ENSG00000237781 | RP11-54A4.2
Description
NA
Coordinates
chr1:150554535-150556052:-
Coord C1 exon
chr1:150555954-150556052
Coord A exon
NA
Coord C2 exon
chr1:150554535-150554610
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTGCTGTCTCCTGACCCAGCCC
3' ss Score
6.31
Exon sequences
Seq C1 exon
TGAGAGCACAAAAACAGCCCCACCATCCCCAGCCAGACCCAGGGACATGGACAGGTGCCCGATCAGATCCTTCAGGCTCTGCTCAGCGCAGCTTGGCAG
Seq A exon
NA
Seq C2 exon
CCCCAGGGAGAAGAAAGAAGGCATGGCGCAGGGGAAGCAGAGGGGCTGGAAGTCATTCAGGGCTGGGAGTAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237781-4-15,4-14,4-13,4-12,4-11-1/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATCAGATCCTTCAGGCT
R:
ACTCCCAGCCCTGAATGACTT
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains