HsaALTA1059359-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000239810 | PRAMEF11
Description
PRAME family member 11 [Source:HGNC Symbol;Acc:HGNC:14086]
Coordinates
chr1:12825866-12827830:-
Coord C1 exon
chr1:12827249-12827830
Coord A exon
NA
Coord C2 exon
chr1:12825866-12825966
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTTTTTTTTTTTTTAATAGAGT
3' ss Score
9.12
Exon sequences
Seq C1 exon
TGCTTCCTCAATGCCAAGAGGAACAAAAAACCAGTGCAGGACTGTCCAAGGATGAGAGGACGGCAGCCCTTGACTGTGTTTGTAGAACTTTGGCTCAAGAACAGGACTCTGGATGAATACCTCACCTGCCTCCTTCTATGGGTCAAGCAGAGGAGAGATTTACTACACCTGTGCTGTAAGAAGCTGAAAATTTTGGGAATGCCCTTCCGCAATATCAGAAGCATCCTGAAAATGGTGAACCTAGACTGTATCCAGGAGGTGGAAGTGAATTGCAAGTGGATACTGCCCATCCTGACACAGTTTACCCCATACCTGGGCCACTTGAGGAATCTTCAGAAGCTCGTTCTCTCCCACATGGATGTCTCTCGCTACGTTTCCCCAGAGCAGAAGAAGGAGATTGTTACCCAGTTCACCACTCAGTTCCTCAAGCTGCGCTGCCTCCAAAAGCTTTATATGAACTCTGTTTCTTTCCTCGAAGGCCACCTGGACCAGCTGCTCAG
Seq A exon
NA
Seq C2 exon
AGTATCACTCTGTCACCCAGGCTGGAGTGTAGTGGCATGATCTCTGCTCACTGCAACCTACACCTCCTGGGTTCAAGCGATTCTTCTGCCTCAGCTTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000239810-4-4,4-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTGGATACTGCCCATCC
R:
GAGGTGTAGGTTGCAGTGAGC
Band lengths:
295-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains