HsaALTA1060284-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000250208 | FZD10-AS1
Description
FZD10 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:48632]
Coordinates
chr12:130154493-130155782:-
Coord C1 exon
chr12:130155352-130155782
Coord A exon
chr12:130154614-130154688
Coord C2 exon
chr12:130154493-130154613
Length
75 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTCTGTTCCTCCTCCAGCAGGAA
3' ss Score
7.63
Exon sequences
Seq C1 exon
GGCTGCCACACTTGTGTATCCCTTCTTCCTTGAATTTAACCAGGAGTGAGCAGTGGACAGCTTCTTCCCTATGAGAAGGAGGTGAAGCAGGACCTGAAATCCCGTGCTCAGCTCCCACATGCCCCGTGTCCAGGACAAGTCCTTTGCTGAATCAGCGGCAGACACCACCCGGAGCCCTGCGGGAGCCTTTCCCTGTTCTTCCAGCATGGATCTGAAACTCCCTTCCCACTTTCTGCAGCCTCCCAGAGATAGTTCAGGCTCCAGCCTCATGTGATAGCATGAAGAGAAACTGGTTCCAACAGCTGTGTGCTCTGCTGCCCTCATCCCAAACAACAGTTTAAATGCACAATTACGCTTTTCTCTAAGGCCCAAAATAGGATAGGAAAGATCGTTTTGCTATCCCTGAATGCCTGTCACCCTTGTTTCGTAAG
Seq A exon
GAAGTCAGTCCCAGAATAGTTGTTCTGCTCCCTCCCTTCTAATAAGTGCTGCGCTGAGTGTGCTTGCTTTGCCAG
Seq C2 exon
ATGGTTAAAACAGAGCAGGGGATAGAAGGACAGATGTCTTCACCCTCATGGAGTTCACCTTCCAGTAGGAGGAGGCGATAGGCCGGGGTCTGCACATGTGCGTGCTACAGCCTGTTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250208-7-6,7-5,7-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCATCCCAAACAACAGT
R:
AGGTGAACTCCATGAGGGTGA
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains