HsaALTA1061261-2/3 @ hg38
Alternative 3'ss
Gene
NA
Description
NA
Coordinates
chr6:32162568-32166232:+
Coord C1 exon
chr6:32162568-32162622
Coord A exon
chr6:32166138-32166144
Coord C2 exon
chr6:32166145-32166232
Length
7 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TAACCTTTTCTTGCCTGCAGCCT
3' ss Score
9.59
Exon sequences
Seq C1 exon
CTTCTTTGGTTTCTATGATGCAAATGAGACCGTCCTGGAGATGGAGGAGCAACTG
Seq A exon
CCTGTAG
Seq C2 exon
GGTCCAGCGTCAAAGCGAATCATGGGGTCCAGGGCTGAGCTGTGCACTCTCTTAGGCGGATTCTCCTTCCTCCTGCTACTGATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258388-7-16,7-15,7-14-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(22.0=100)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATGAGACCGTCCTGGAG
R:
ATCCGCCTAAGAGAGTGCACA
Band lengths:
97-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains