HsaALTA1061263-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000258405 | ZNF578
Description
zinc finger protein 578 [Source:HGNC Symbol;Acc:HGNC:26449]
Coordinates
chr19:52456868-52458154:+
Coord C1 exon
chr19:52456868-52456958
Coord A exon
NA
Coord C2 exon
chr19:52457920-52458154
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAG
5' ss Score
4.67
3' ss Seq
ACTTAAATTCCATCTCACAGTGA
3' ss Score
6.39
Exon sequences
Seq C1 exon
GATTAGCTTCTAAAGTCTCTTTCATCTCTCCTAAGGAAGAAGCCTAGAAGAGGAGGAAGAGGAAAGAAAAGGAGTCAGGAATGCCTCTTAG
Seq A exon
NA
Seq C2 exon
TGACTGGTGCTGTGGAATTTGTGAAGAGGCTCCATTGGGAAGGGCTTATACCCAGACATGGATGGAGACGGGGTGTGGGCCCCATGGTGTCACTGCTCTTGGGCAGCAGGAATTGAAGGATTGTTTAAGGGCCAGGTCTGGAGGCACTGCCAGCTCTGTAGACTGGATTATGGAAGCTGCTCGTGGAAGTCTTAATGTGCACAACTGCCTGATAAAATTTGGAAGAAGAGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258405-4-7,4-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGTCAGGAATGCCTCTT
R:
CAAGAGCAGTGACACCATGGG
Band lengths:
124-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains