HsaALTA1061573-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000260220 | CCDC187
Description
coiled-coil domain containing 187 [Source:HGNC Symbol;Acc:HGNC:30942]
Coordinates
chr9:136267384-136268125:-
Coord C1 exon
chr9:136268049-136268125
Coord A exon
chr9:136267512-136267517
Coord C2 exon
chr9:136267384-136267511
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
GGGCCTTGGGCCGCTTCAAGCTG
3' ss Score
1.36
Exon sequences
Seq C1 exon
AGGTGGAGGGCCCTGACGGAGCCCTCTCCCAGCTTCCCCTGGCCAAGTTCTTCCCTCCGGACAACCCCACCCACCAG
Seq A exon
CTGCAG
Seq C2 exon
ATGCTGGAGCGGAGCCTGCGGGAGGAGGAGCTGCGAGCACAGCACCAGGCCGCGCTGCTGCGCCTGCGAGAGATGGCGCTCCAGGAGAAAACGCTCGCGGAGCTGGCCTGGCTGGAGCATCGACGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260220-26-25,26-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=NA C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCTGGCCAAGTTCTTC
R:
CTGGTGCTGTGCTCGCAG
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains