HsaALTA1061574-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000260220 | CCDC187
Description
coiled-coil domain containing 187 [Source:HGNC Symbol;Acc:HGNC:30942]
Coordinates
chr9:136262311-136263798:-
Coord C1 exon
chr9:136263622-136263798
Coord A exon
chr9:136262371-136262462
Coord C2 exon
chr9:136262311-136262370
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCCTGCACCATTTCTTACAGGGT
3' ss Score
7.31
Exon sequences
Seq C1 exon
AGGGAAATCCAATACCTGAGACACACGCAGCTGTTCAGGCACCGGGACAGGAAGCTGCTTCTGCAGCATCAGAGGGACGTCGTCTCCATGCCGGGGCCTGTGGACATCCTCCCCATCCCGGGGCCCACGGACGTCGTCCCAGCGCACGAGCTGCAGGCCCAGGCCAAGCTGCAGCAG
Seq A exon
GGTTCCAGCCCCAAAGTCAAGGCCGCCTGGGAGGGAGGCTCAGAGACAAGCCAGCAGCCAGAGGCCTCCCTGTGTCCCCTGACCCCATGCAG
Seq C2 exon
GCCCAGCAGCTCCACCAGCCATCGCCCCCAGAGCAGCCCCGCAAGCTCAAAGGCCACGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260220-32-32,32-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.678 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCAGCATCAGAGGGAC
R:
CTTTGAGCTTGCGGGGCTG
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains