HsaALTA1061927-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000263072 | ZNF213-AS1
Description
ZNF213 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:50505]
Coordinates
chr16:3125600-3129653:-
Coord C1 exon
chr16:3129248-3129653
Coord A exon
chr16:3125963-3125966
Coord C2 exon
chr16:3125600-3125962
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
GGGTGCTGCCTTTACACCAGGCA
3' ss Score
4.5
Exon sequences
Seq C1 exon
GCTCCGGCATGACGGGTGACTTCTTCCGAGTCTGGCTTCTGCAGCACACAGGGCTTCGCCAGCACCCAGCTCCTGCAGCATGGGCAGCTCCTGTGACAGCAGGCGCCCGCAGCCTGCAAAGCGTCTCCAGTGCCGCCGCCTCAGTGAACCTCAACCAGCGGCACCTAGCAGCTTTCTCTGCCACCCTCTTCAGGTAGTTCTGTAGCAGCGCGTTTCTCATGAGACACTTCCCTGTGAGCAGCTTTTTCTACCCTTGAGGATGGATTTCCAGCAAATTCTGCCCATGTGGTACCACAGCCACTTCTCTGCCATTCAGTGAAACTGCCGTTGTGCCCTCTTCAAGGTCTGGATCTAAGCCCAGGGACCAGGAAACCTCTTGCTTGAGTGCTGGAACTCAGGCCAGAAG
Seq A exon
GCAG
Seq C2 exon
GAAGCCCGCCTGACCCCATGTCTCAGGCTGCCAGAGGAGCGTGCGATGAGGAAGGCTGGACTGTCTTCACAGGACACCAGGGAGAAGCCTCAAGCCACTGCCCCCTGACAAGTCGCAGCTCTCCAGCCTGTCTCCTCACTCCCCTCCCCTCCACATGGGGGGGTTGGGGTGGGGGCGGGGAAGGTTCGGGGCAGGGGTCATTTCAGCTACTGGGCACCAGTCTCCTCCTCATGTTTATCCTGTTCCCTTTGCTTGAAAGGTTCGTACTCCAGATCCTTGTAAAACCGCTTCTCACCCTTTGAGTCTCAGCTTAAATGTCCCCTCCTTGGAGGGGTCTTCCCTGACAATGAAGCTCCGACCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000263072-16-19,16-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCTTGCTTGAGTGCTGG
R:
AAGACAGTCCAGCCTTCCTCA
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains