HsaALTA1063213-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000283294 | RP11-681B3.4
Description
NA
Coordinates
chr18:14250288-14255091:+
Coord C1 exon
chr18:14250288-14250407
Coord A exon
chr18:14251969-14252293
Coord C2 exon
chr18:14252294-14255091
Length
325 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCA
5' ss Score
6.43
3' ss Seq
GGCCCTGTTGACCCAAGCAGGCT
3' ss Score
2.38
Exon sequences
Seq C1 exon
CCCTGGAATGAGTCATTTTTTTTAGAAGCAGAGGTGGAGCCACTGAGGAAGCACAGGCGAGCCCTCCCCAGCGTGTACTCACTGGTCCCCAACAGAAGAACAGCTGCCGCATCCACTGAG
Seq A exon
GCTTCCATTGTGGTGGGTTGTGTCACCCCACAATGTCACTGTTGCTGAGTCTCCATCGCCTCTGTGTTGTGGAGCAGTTAGAGACACACAGCAGTGTCTGTGAGTGGCTCTGTTGAAGGACCGTTTTCTAGATGAGAGGCACATCTCAACACAGCTCACTGATCAGACTCAGGTGAGTGGGACCTGCTCTCCTCTCTTCCTCCTGGCTTGGGGACAGTCACTATCAGGTGGGTGGTTTTGGCCTCTGGGCAGCTACTGAGGGGAATCCCTGAACACTCACCGGGTGCCTGTTCTGTGCTGACGGTCGTCTCATTCATCCTCGCAG
Seq C2 exon
CAATTCCATTCTGCATCTTTTCTCATCACCTCCGTGACCACCCAGGACAACCCCATCAGGGCCCTGTCACCAGGCCCAGTCCAGCTCCATGATAACCAAGACACAGGTCCAGAGACAACCATCCTGCATCATGCCTGCATCTGAACCCCCTTGGTGGGTAGTGACCAGCATAACATGGAAGAAGCCAGGGCAGCATGCGGCCAGCTGCTCTGCAGCCCCAGATGGCTCCTGGGCCTTGGGAAGTCATTCTTAAAGGGGAAGCTGGTCACTTTGAGGTCCCTGAAGGGAAGGGTGAATGTGCATCCCAACAGCCCTGGCAGCCAGCAGCATGCCATACATCTTCTCACCCAACCTGTGTGACAGAGGGCCCCTCCTGGGGCACAAGTCCCATACCTAAAGCATCCTGTCCCAGTTGGACCTCATCCTGAGCCCTGGGAGGGGAGGGGCATCATGGGCCCCCCTGCAGCAGCCAGGATTACCACCCAGGGGACTTGGCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283294-15-20,15-19,15-18-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACTGGTCCCCAACAGAA
R:
GTTGGGATGCACATTCACCCT
Band lengths:
353-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains