HsaALTA1063882-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000075407 | ZNF37A
Description
zinc finger protein 37A [Source:HGNC Symbol;Acc:HGNC:13102]
Coordinates
chr10:38094931-38095559:+
Coord C1 exon
chr10:38094931-38095224
Coord A exon
NA
Coord C2 exon
chr10:38095538-38095559
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
TCGTTACTCGCTCGTTCTAGATG
3' ss Score
7.78
Exon sequences
Seq C1 exon
GTCGCAGCTTCATTGCCTGATGTCTTCGGGAAGTATTTTGAAGTCATCGTGGCTGTGGATTGGGGAATTTCTTGTTTCCACTGACCTGTGAGGCCGCGCACGCGGAGGGAGGCACCCCAGGCCCTCCGGCACTGTCCAGCCTCGCCTGTGTCCCCATTAGCACCAGTGGGCATTTTCAGAGGGTCCAGCTCATGGCTCAAGTGACAGGAAGATGTAGGAGCTTTCTGTCTTGAATGAGGATTCGAACCAAAGGGCTTAGGCCCAGCTGTCTTGGAGCAAAGCAGCTGTTGTGGG
Seq A exon
NA
Seq C2 exon
ATGCTGAGCTGCTGGCGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075407-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains