HsaALTA1063944-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000105136 | ZNF419
Description
zinc finger protein 419 [Source:HGNC Symbol;Acc:HGNC:20648]
Coordinates
chr19:57490147-57491597:+
Coord C1 exon
chr19:57490147-57490185
Coord A exon
chr19:57491468-57491470
Coord C2 exon
chr19:57491471-57491597
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTCTACTCTGTCCATCTTAGCAG
3' ss Score
5.38
Exon sequences
Seq C1 exon
GTTCCTGTGGCTGCAGACTTGCTTACAGACCATGAGGAG
Seq A exon
CAG
Seq C2 exon
GGCTATGTGACCTTTGAGGATGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105136-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTGTGGCTGCAGACTTG
R:
GCAATCTCCATTCCTCCTGGG
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains