HsaALTA1064125-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000152439 | ZNF773
Description
zinc finger protein 773 [Source:HGNC Symbol;Acc:HGNC:30487]
Coordinates
chr19:57499915-57504786:+
Coord C1 exon
chr19:57499915-57500113
Coord A exon
NA
Coord C2 exon
chr19:57504660-57504786
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AACTCTGTCCATCTTAGCAGGGC
3' ss Score
6.48
Exon sequences
Seq C1 exon
ACTCAGCTTGCCGGAAGCTGGTTGTTCGCTGCGGCGACCAGCTCCGGAAAGCGCGGTGGGGACGCGCTGTGTTCTCGCAGCTCAGAGGCGGGTCTGAGGCTCGGTGGCGGCGCCCAGGGTGGCCCGGGCCCTTTCCTCGGTCGTTGTCTCACCGCCACAGGCTCCGATGGCGGCGGCCACGCTGAGGGACCCCGCTCAG
Seq A exon
NA
Seq C2 exon
GGCTATGTGACCTTTGAGGACGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152439-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCCTCGGTCGTTGTCTC
R:
AGTAGACAGCCACGTCCTCAA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains