HsaALTA1064173-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger MYM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr1:35030547-35031968:-
Coord C1 exon
chr1:35031815-35031968
Coord A exon
chr1:35030714-35030756
Coord C2 exon
chr1:35030547-35030713
Length
43 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
AAAGTTTTTCTTTCATATAGATA
3' ss Score
6.85
Exon sequences
Seq C1 exon
GAGGGCGGAGACCAAGGCTGCGCAGGCGTGGTTGGCCGGTCGTTGCGTTGGGATGGATCAGGCGGAATTCCAGAAGAGAAAATAATCCCTGTCTAGATGCAGAGGACTTGGTTCCTATTCCAGTGCTCCTCCGGTAGCAGGGAGGCGACAGAAG
Seq A exon
ATAAGCCTGAAGAAAAAAGAATAAGCCTGAGTATGTATTTTAG
Seq C2 exon
GTGTCCAACTATCCATTACCAAGAAGAAATCTATTCGTTTGAGCCTGAGACACTCTTTGAGGTAAAAAATTAGAATGAAAGAACCTTTGGATGGTGAATGTGGCAAAGCAGTGGTACCACAGCAGGAGCTTCTGGACAAAATTAAAGAAGAACCAGACAATGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-0-5,0-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.207
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAGTGCTCCTCCGGTAG
R:
GCTTTGCCACATTCACCATCC
Band lengths:
147-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains