HsaALTA1064248-2/2 @ hg38
Alternative 3'ss
Gene
NA
Description
NA
Coordinates
chr12:123973886-123988138:+
Coord C1 exon
chr12:123973886-123974020
Coord A exon
chr12:123988043-123988045
Coord C2 exon
chr12:123988046-123988138
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTTGCATTTCTCCCATCCAGCAG
3' ss Score
7.23
Exon sequences
Seq C1 exon
GGCGCCCTGCGTCCGGCAGAGGAGGCGAGCATCCCGCTCAGGTGATGAGGAACCCCTCGCGCACCCAGCGCAGAAGGCTGCTGCCGCCGGACGCCTCCATTGTTTGACCACAACAAGGGCCGGATTCTCACCCAG
Seq A exon
CAG
Seq C2 exon
GATCCTAAGGCCTTTGTAGTCCTTCAGCCACTGTGGGCCCTGCCTCTGCCTGTTCTTCTGGAATGTCTTGGGGGTTTTGATCCTGTCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179195-4-11,4-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCCTCCATTGTTTGACCA
R:
CAGAAGAACAGGCAGAGGCAG
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains