HsaALTD0000019-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000179869 | ABCA13
Description
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr7:48507872-48511199:+
Coord C1 exon
chr7:48507872-48507956
Coord A exon
chr7:48507957-48508049
Coord C2 exon
chr7:48511084-48511199
Length
93 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
ATTTCTTTTTATCTTCTCAGCTC
3' ss Score
8.87
Exon sequences
Seq C1 exon
CCTGGAGAGCATCCGTCAGTGTGGAGTGGCCCTCTGCATCGTGCTGGGATTCTCCATCCTGTCTGCATCCATCGGCAGCTCTGTG
Seq A exon
GTGAGGGACAGGGTGATTGGAGCCAAAAGGTTGCAGCACATAAGTGGCCTTGGCTACAGGATGTACTGGTTCACAAACTTCCTATATGACATG
Seq C2 exon
CTCTTTTACTTGGTTTCCGTCTGCCTGTGTGTTGCCGTTATTGTCGCCTTCCAGTTAACAGCTTTTACTTTCCGCAAGAACTTGGCAGCCACGGCCCTCCTGCTGTCACTTTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179869-87-98,88-98-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(13.0=65.5)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATCGTGCTGGGATTCTC
R:
CGAAAAGTGACAGCAGGAGGG
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development