HsaALTD0000042-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000118777 | ABCG2
Description
ATP binding cassette subfamily G member 2 (Junior blood group) [Source:HGNC Symbol;Acc:HGNC:74]
Coordinates
chr4:88139793-88158671:-
Coord C1 exon
chr4:88158577-88158671
Coord A exon
NA
Coord C2 exon
chr4:88139793-88140014
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGA
5' ss Score
5.12
3' ss Seq
TATTGCTTTTCTGTCTGCAGAAA
3' ss Score
10.56
Exon sequences
Seq C1 exon
AAAAGGTTCCGGGCGCGCAGGAGGGAAGAGGCAGTGCCCGCCACTCCCACTGAGATTGAGAGACGCGGCAAGGAGGCAGCCTGTGGAGGAACTGG
Seq A exon
NA
Seq C2 exon
AAAGATAAAAACTCTCCAGATGTCTTCCAGTAATGTCGAAGTTTTTATCCCAGTGTCACAAGGAAACACCAATGGCTTCCCCGCGACAGCTTCCAATGACCTGAAGGCATTTACTGAAGGAGCTGTGTTAAGTTTTCATAACATCTGCTATCGAGTAAAACTGAAGAGTGGCTTTCTACCTTGTCGAAAACCAGTTGAGAAAGAAATATTATCGAATATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118777-2-9,3-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(2.6=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTCCCACTGAGATTGAG
R:
TCGACAAGGTAGAAAGCCACT
Band lengths:
243-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development