HsaALTD0000048-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000097007 | ABL1
Description
c-abl oncogene 1, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:76]
Coordinates
chr9:133589739-133729624:+
Coord C1 exon
chr9:133589739-133589839
Coord A exon
NA
Coord C2 exon
chr9:133729451-133729624
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACATGGTG
5' ss Score
-18.02
3' ss Seq
TTCCCCCCTTTCTCTTCCAGAAG
3' ss Score
12.29
Exon sequences
Seq C1 exon
CCAAAGAAGGCCAAGCTTGCCTGCCCTGCATTTTATCAAAGGAGCAGGGAAGAAGGAATCATCGAGGCATGGGGGTCCACACTGCAATGTTTTTGTGGAAC
Seq A exon
NA
Seq C2 exon
AAGCCCTTCAGCGGCCAGTAGCATCTGACTTTGAGCCTCAGGGTCTGAGTGAAGCCGCTCGTTGGAACTCCAAGGAAAACCTTCTCGCTGGACCCAGTGAAAATGACCCCAACCTTTTCGTTGCACTGTATGATTTTGTGGCCAGTGGAGATAACACTCTAAGCATAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000097007-0-5,1-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.836 A=NA C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=PU(38.3=30.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAATCATCGAGGCATGGG
R:
ACCCTGAGGCTCAAAGTCAGA
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)