HsaALTD0000141-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000115170 | ACVR1
Description
activin A receptor, type I [Source:HGNC Symbol;Acc:171]
Coordinates
chr2:158655939-158675071:-
Coord C1 exon
chr2:158674897-158675071
Coord A exon
chr2:158674781-158674896
Coord C2 exon
chr2:158655939-158656012
Length
116 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
3' ss Seq
CTCTTCTTTTCCCTTTACAGTTG
3' ss Score
12.36
Exon sequences
Seq C1 exon
CCTGGAGCATTGGTAAGCGTCACACTGCCAAAGTGAGAGCTGCTGGAGAACTCATAATCCCAGGAACGCCTCTTCTACTCTCCGAGTACCCCAGTGACCAGAGTGAGAGAAGCTCTGAACGAGGGCACGCGGCTTGAAGGACTGTGGGCAGATGTGACCAAGAGCCTGCATTAAG
Seq A exon
GTAGCTGAGTAAGCTTTACCCAGGAGCTCTCAGAACGGCATTGCCAGAACCAGCAGTGCAGCCACTTCAACAAATCACTTCTTTTAATACTCTTTGGCAGAGATCAAATCTACAGG
Seq C2 exon
TTGTACAATGGTAGATGGAGTGATGATTCTTCCTGTGCTTATCATGATTGCTCTCCCCTCCCCTAGTATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115170-8-9,9-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCATTGGTAAGCGTCAC
R:
ATACTAGGGGAGGGGAGAGCA
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)