HsaALTD0000155-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:1366]
Coordinates
chr9:136295152-136297813:+
Coord C1 exon
chr9:136295152-136295221
Coord A exon
chr9:136295222-136295301
Coord C2 exon
chr9:136297709-136297813
Length
80 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CCACCTGTCCACCCTCCTAGGAT
3' ss Score
9.19
Exon sequences
Seq C1 exon
CGCCAACGAGCAGTGCCGCGTGGCCTTCGGCCCCAAGGCTGTCGCCTGCACCTTCGCCAGGGAGCACCTG
Seq A exon
GTGAGTCTGCCGGCGGTGGCCTGGGATTGGCTGTGAGGTCCCTCCGCATCACCCAGCTCACGTCCCCCAAAACGTGCATG
Seq C2 exon
GATATGTGCCAGGCCCTCTCCTGCCACACAGACCCGCTGGACCAAAGCAGCTGCAGCCGCCTCCTCGTTCCTCTCCTGGATGGGACAGAATGTGGCGTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323-10-12,11-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=PD(5.3=20.0)
A:
NA
C2:
PF135821=Reprolysin_3=PD(3.3=11.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGCCTGCACCTTCG
R:
CTTCTCCACGCCACATTCTGT
Band lengths:
137-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)