HsaALTD0000198-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000204305 | AGER
Description
advanced glycosylation end product-specific receptor [Source:HGNC Symbol;Acc:320]
Coordinates
chr6:32150891-32151165:-
Coord C1 exon
chr6:32151101-32151165
Coord A exon
NA
Coord C2 exon
chr6:32150891-32150978
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
GGTCACCACTCTTTCCCCAGGTG
3' ss Score
9.29
Exon sequences
Seq C1 exon
AGATTCCTGGGAAGCCAGAAATTGTAGATTCTGCCTCTGAACTCACGGCTGGTGTTCCCAATAAG
Seq A exon
NA
Seq C2 exon
GTGGGGACATGTGTGTCAGAGGGAAGCTACCCTGCAGGGACTCTTAGCTGGCACTTGGATGGGAAGCCCCTGGTGCCTAATGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204305-4-5,5-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.363 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(3.0=7.7),PF082057=C2-set_2=PU(16.7=41.0)
A:
NA
C2:
PF082057=C2-set_2=FE(30.2=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGAAGCCAGAAATTGT
R:
CTTCTCATTAGGCACCAGGGG
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)