HsaALTD0000221-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000204472 | AIF1
Description
allograft inflammatory factor 1 [Source:HGNC Symbol;Acc:352]
Coordinates
chr6:31582970-31583359:+
Coord C1 exon
chr6:31582970-31583070
Coord A exon
NA
Coord C2 exon
chr6:31583298-31583359
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTCTGT
5' ss Score
0.67
3' ss Seq
TAATTTTTTTCACCCCACAGGAG
3' ss Score
9.09
Exon sequences
Seq C1 exon
AGAGGAGGAAGGAATGAGGGGAAAGGGGAAGTTTGGGAGGAAGGCTTCTGAGAAGACTGGTGGGAGAGAAGGAGAGCCTGCAGACAGAGGCCTCCAGCTTG
Seq A exon
NA
Seq C2 exon
GAGGAAAAGCTTTCGGACTGCTGAAGGCCCAGCAGGAAGAGAGGCTGGATGAGATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204472-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=NA C2=0.119
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134991=EF-hand_7=PU(13.7=61.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGGGGAAGTTTGGGAGG
R:
TCATCCAGCCTCTCTTCCTGC
Band lengths:
134-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)