HsaALTD0000458-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000162980 | ARL5A
Description
ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696]
Coordinates
chr2:152683994-152685003:-
Coord C1 exon
chr2:152684903-152685003
Coord A exon
NA
Coord C2 exon
chr2:152683994-152684354
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
3' ss Seq
GTAAAGGTTTCTTGCCCTAGGTC
3' ss Score
6.22
Exon sequences
Seq C1 exon
CGCGTGGTCGTCGCCACCGCAGCCGCCCGAGAGGAGCTGGGGGAGGACGGTGGCCCGCGAGGCTCGTCGCAGACAACGCGGCGGCGATGTCCGCGAGCCAG
Seq A exon
NA
Seq C2 exon
GTCCGACGTCCCTGAGTAGCACGGCCTGGCCTGTCTTTCAGCCCTTTCTTTGCTCACCAGTTGTGTTTGGACACCACATAGAAGTGCTGGGGTCTTCTGGAATGAAGGTTATAGATTGCTGCCCTAACCGCACCACTGAGCGACCGAGGGTTGCAGAATGCGGAAAACGGGAGGAATCGCTCGACTTGTCCATTACACCTCTGGTTTATGAGCCTGCCCTCCACTGCCACCCGTCTTTGTGTGTGTTGGGGGCAGGGGGGGTTCTTCTGCCTCCTGAATAGAGATGGACTTCTCTCCATTTGTTTTACTTATTATATCTGTGTTTAAGGTTAAGCTTAAGGTCATTTTTCTACTCGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162980-0-0,2-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0002516=Arf=PU(6.4=68.8)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGAGCTGGGGGAGGA
R:
GTGGAGGGCAGGCTCATAAAC
Band lengths:
297-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)