HsaALTD0000584-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000159199 | ATP5G1
Description
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:841]
Coordinates
chr17:46970216-46971811:+
Coord C1 exon
chr17:46970216-46970272
Coord A exon
NA
Coord C2 exon
chr17:46971711-46971811
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
TTCCTTGACTGATTTGGTAGGAT
3' ss Score
3.61
Exon sequences
Seq C1 exon
CTTGAGCCGGGCGAGCGCTGTGGGCCAAGCAGGGGTTGCAGGGTAGTAGGAGTGCAG
Seq A exon
NA
Seq C2 exon
GATGTGGCTTTCTGATTTTACAGATCCGCTGTTGTACCAGGGGTCTAATCAGGCCTGTGTCTGCCTCCTTCTTGAATAGCCCAGTGAATTCATCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159199-1-4,2-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCAAGCAGGGGTTG
R:
TGTTTAGATGAATTCACTGGGCT
Band lengths:
137-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)