HsaALTD0000584-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000159199 | ATP5G1
Description
ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:HGNC:841]
Coordinates
chr17:48892854-48893456:+
Coord C1 exon
chr17:48892854-48892895
Coord A exon
chr17:48892896-48892910
Coord C2 exon
chr17:48893409-48893456
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
TATTTTTTCCCCCTCTGCAGACT
3' ss Score
10.53
Exon sequences
Seq C1 exon
CTTGAGCCGGGCGAGCGCTGTGGGCCAAGCAGGGGTTGCAGG
Seq A exon
GTAGTAGGAGTGCAG
Seq C2 exon
ACTGAAAAAATGCAGACCGCCGGGGCATTATTCATTTCTCCAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159199-1-2,2-2,3-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains