HsaALTD0000739-1/3 @ hg19
Alternative 5'ss
Gene
ENSG00000204256 | BRD2
Description
bromodomain containing 2 [Source:HGNC Symbol;Acc:1103]
Coordinates
chr6:32945942-32947909:+
Coord C1 exon
chr6:32945942-32946091
Coord A exon
NA
Coord C2 exon
chr6:32947605-32947909
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGCAAGT
5' ss Score
1.97
3' ss Seq
ACAACTCTTTTTGCCCTTAGGCT
3' ss Score
9.5
Exon sequences
Seq C1 exon
GGTCCAATATCCAAGCCCAAGAGGAAAAGAGAGAAAAAAGAGAAAAAGAAGAAACGGAAGGCAGAGAAGCATCGAGGCCGAGCTGGGGCCGATGAAGATGACAAGGGGCCTAGGGCACCCCGCCCACCTCAACCTAAGAAGTCCAAGAAA
Seq A exon
NA
Seq C2 exon
GCTCCCCAAAAAGGCCACAAAGACAGCCCCACCTGCCCTGCCTACAGGTTATGATTCAGAGGAGGAGGAAGAGAGCAGGCCCATGAGTTACGATGAGAAGCGGCAGCTGAGCCTGGACATCAACAAATTACCTGGGGAGAAGCTGGGCCGAGTTGTGCATATAATCCAAGCCAGGGAGCCCTCTTTACGTGATTCAAACCCAGAAGAGATTGAGATTGATTTTGAAACACTCAAGCCATCCACACTTAGAGAGCTTGAGCGCTATGTCCTTTCCTGCCTACGTAAGAAACCCCGGAAGCCCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204256-20-31,21-31,22-31-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.760
Domain overlap (PFAM):
C1:
PF090735=BUD22=FE(27.0=100)
A:
NA
C2:
PF090735=BUD22=PD(13.0=40.8),PF0310514=SPX=PU(23.9=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGATGAAGATGACAAGGGG
R:
GGGCTGTCTTTGTGGCCTTTT
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)