HsaALTD0001265-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule-like 1 [Source:HGNC Symbol;Acc:30375]
Coordinates
chr12:7585012-7586290:-
Coord C1 exon
chr12:7585970-7586290
Coord A exon
chr12:7585940-7585969
Coord C2 exon
chr12:7585012-7585332
Length
30 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCTGCTTGTCTTTCTCGTAGGTG
3' ss Score
10.41
Exon sequences
Seq C1 exon
ATGGAACAGATTTGGAGTTGAGGCTGGTCAATGGAGACGGTCCCTGCTCTGGGACAGTGGAGGTGAAATTCCAGGGACAGTGGGGGACTGTGTGTGATGATGGGTGGAACACTACTGCCTCAACTGTCGTGTGCAAACAGCTTGGATGTCCATTTTCTTTCGCCATGTTTCGTTTTGGACAAGCCGTGACTAGACATGGAAAAATTTGGCTTGATGATGTTTCCTGTTATGGAAATGAGTCAGCTCTCTGGGAATGTCAACACCGGGAATGGGGAAGCCATAACTGTTATCATGGAGAAGATGTTGGTGTGAACTGTTATG
Seq A exon
GTAAGAGTCTAACTAGAGTAGGAAGGCAAG
Seq C2 exon
GTGAAGCCAATCTGGGTTTGAGGCTAGTGGATGGAAACAACTCCTGTTCAGGGAGAGTGGAGGTGAAATTCCAAGAAAGGTGGGGAACTATATGTGATGATGGGTGGAACTTGAATACTGCTGCCGTGGTGTGCAGGCAACTAGGATGTCCATCTTCTTTTATTTCTTCTGGAGTTGTTAATAGCCCTGCTGTATTGCGCCCCATTTGGCTGGATGACATTTTATGCCAGGGGAATGAGTTGGCACTCTGGAATTGCAGACATCGTGGATGGGGAAATCATGACTGCAGTCACAATGAGGATGTCACATTAACTTGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675-2-2,3-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
NA
C2:
PF0053013=SRCR=WD(100=90.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAATGGGGAAGCCATAAC
R:
CACCTCCACTCTCCCTGAACA
Band lengths:
123-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)