HsaALTD0001274-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000117335 | CD46
Description
CD46 molecule, complement regulatory protein [Source:HGNC Symbol;Acc:6953]
Coordinates
chr1:207963598-207968858:+
Coord C1 exon
chr1:207963598-207963669
Coord A exon
NA
Coord C2 exon
chr1:207966864-207968858
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
CTTTATACCTTGGTTTGCAGGAA
3' ss Score
8.18
Exon sequences
Seq C1 exon
CACATACCTAACTGATGAGACCCACAGAGAAGTAAAATTTACTTCTCTCTGAGAAGGAGAGATGAGAGAAAG
Seq A exon
NA
Seq C2 exon
GAAAGCAGATGGTGGAGCTGAATATGCCACTTACCAGACTAAATCAACCACTCCAGCAGAGCAGAGAGGCTGAATAGATTCCACAACCTGGTTTGCCAGTTCATCTTTTGACTCTATTAAAATCTTCAATAGTTGTTATTCTGTAGTTTCACTCTCATGAGTGCAACTGTGGCTTAGCTAATATTGCAATGTGGCTTGAATGTAGGTAGCATCCTTTGATGCTTCTTTGAAACTTGTATGAATTTGGGTATGAACAGATTGCCTGCTTTCCCTTAAATAACACTTAGATTTATTGGACCAGTCAGCACAGCATGCCTGGTTGTATTAAAGCAGGGATATGCTGTATTTTATAAAATTGGCAAAATTAGAGAAATATAGTTCACAATGAAATTATATTTTCTTTGTAAAGAAAGTGGCTTGAAATCTTTTTTGTTCAAAGATTAATGCCAACTCTTAAGATTATTCTTTCACCAACTATAGAATGTATTTTATATATCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117335-21-25,22-25-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.738
Domain overlap (PFAM):
C1:
PF146101=DUF4448=PD(0.7=5.6)
A:
NA
C2:
PF0248011=Herpes_gE=PD(24.7=72.0),PF060117=TRP=PD(31.6=72.0),PF122163=m04gp34like=PD(6.9=16.0),PF128772=DUF3827=PD(29.7=76.0),PF054546=DAG1=PD(28.6=72.0),PF151761=LRR19-TM=PD(36.2=84.0),PF151021=TMEM154=PD(30.2=76.0),PF145751=EphA2_TM=PD(40.0=88.0),PF0200911=Rifin_STEVOR=PD(11.4=20.0),PF055686=ASFV_J13L=PD(31.6=72.0),PF126692=P12=PD(23.3=40.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATACCTAACTGATGAGACCCAC
R:
GTGGCATATTCAGCTCCACCA
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)