HsaALTD0001452-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128167095-128169103:-
Coord C1 exon
chr9:128169076-128169103
Coord A exon
NA
Coord C2 exon
chr9:128167095-128167164
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGAG
5' ss Score
-1.65
3' ss Seq
CCACACTTGCATGTTTTCAGGTG
3' ss Score
7.85
Exon sequences
Seq C1 exon
GGATGATGAGGATGAAGAAGAGATCGAG
Seq A exon
NA
Seq C2 exon
GTGAGGTCCAGAGATATATCCAGAGAGGAGTGGAAGGGCTCGGAGACCTACAGCCCCAATACTGCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-64-105,65-105-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.461 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGATGAGGATGAAGAAGAGATCG
R:
TGCAGTATTGGGGCTGTAGGT
Band lengths:
94-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development