HsaALTD0001627-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000160111 | CPAMD8
Description
C3 and PZP like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr19:16970891-16975258:-
Coord C1 exon
chr19:16975110-16975258
Coord A exon
chr19:16975087-16975109
Coord C2 exon
chr19:16970891-16971033
Length
23 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGTC
5' ss Score
-0.57
3' ss Seq
GGGTGTTGTCTGTTGCCTAGGAA
3' ss Score
5.51
Exon sequences
Seq C1 exon
GTTTTCCAGGAACTGGAAGATTATGATGTTTCTGATTCCTTTGGCGTGTCCAGGGAGGATGGTCCTTTTTGGTGGGCTGGGCTGACGGCACAACGACGCCGGCGCTCCTCTGTCTTCCCGTGGCCTTGGGGCATCACCAAGGACTCTGG
Seq A exon
GTTTGCCTTCACCGTAAGGAGAG
Seq C2 exon
GAAACGGGACTGGTGGTGATGACCGACCGAGTGAGCCTGAACCACCGGCAGGACGGTGGCCTCTACACCGATGAGGCTGTCCCCGCTTTCCAGCCCCACACAGGGAGCCTGGTGGCAGTGGCTCCTTCCAGGCACCCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160111-30-29,31-29,32-29-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTCCTTTTTGGTGGGCTG
R:
CATCACCACCAGTCCCGTTTC
Band lengths:
112-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains