HsaALTD0001656-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000106066 | CPVL
Description
carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:14399]
Coordinates
chr7:29160509-29186113:-
Coord C1 exon
chr7:29186045-29186113
Coord A exon
NA
Coord C2 exon
chr7:29160509-29160687
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGCGTAAGT
5' ss Score
9.93
3' ss Seq
GAATGCTGTTTTTATCCTAGACC
3' ss Score
6.74
Exon sequences
Seq C1 exon
AGCGCTGCAAGGACAACCGGCTGGGGTCCTTGCGCGCCGCGGCTCAGGGAGGAGCACCGACTGCGCCGC
Seq A exon
NA
Seq C2 exon
ACCCTGAGAGATGGTTGGTGCCATGTGGAAGGTGATTGTTTCGCTGGTCCTGTTGATGCCTGGCCCCTGTGATGGGCTGTTTCGCTCCCTATACAGAAGTGTTTCCATGCCACCTAAGGGAGACTCAGGACAGCCATTATTTCTCACCCCTTACATTGAAGCTGGGAAGATCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106066-6-9,7-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGGCTGGGGTCCTTG
R:
CTGAGTCTCCCTTAGGTGGCA
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)