HsaALTD0001665-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:17888]
Coordinates
chr7:65579846-65592727:+
Coord C1 exon
chr7:65579846-65579901
Coord A exon
chr7:65579902-65579957
Coord C2 exon
chr7:65592691-65592727
Length
56 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
AGCTTACTTTTCTTTTTCAGGAA
3' ss Score
11.04
Exon sequences
Seq C1 exon
GGCGCGCGGAGCTGGCACCTTGGCGCTGTTGGTGGCGGCGGAGACAGCTGTGAAGT
Seq A exon
GTGAGGTTCTTTGTCTGCTGGCAGCTAGGGGCGACGAGGCGGGACGTCATGGAAGT
Seq C2 exon
GAAGGATGCCAATTCTGCGCTTCTCAGTAACTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258-1-8,2-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.187
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0387411=RNA_pol_Rpb4=PU(11.5=76.9)
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGGCGCTGTTGGTG
R:
TCGTAGTTACTGAGAAGCGCA
Band lengths:
76-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)