HsaALTD0001775-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000138115 | CYP2C8
Description
cytochrome P450, family 2, subfamily C, polypeptide 8 [Source:HGNC Symbol;Acc:2622]
Coordinates
chr10:96827286-96829092:-
Coord C1 exon
chr10:96828992-96829092
Coord A exon
chr10:96828954-96828991
Coord C2 exon
chr10:96827286-96827448
Length
38 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ATTTGCATTTCCTTTCCCAGTTC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GCTGTAGGAGAAGGAAGCTCCCTCCTGGCCCCACTCCTCTTCCTATTATTGGAAATATGCTACAGATAGATGTTAAGGACATCTGCAAATCTTTCACCAAT
Seq A exon
GTAAGTCTGCCTTATGTTCCTCCAGCCAATTGCAAAGG
Seq C2 exon
TTCTCAAAAGTCTATGGTCCTGTGTTCACCGTGTATTTTGGCATGAATCCCATAGTGGTGTTTCATGGATATGAGGCAGTGAAGGAAGCCCTGATTGATAATGGAGAGGAGTTTTCTGGAAGAGGCAATTCCCCAATATCTCAAAGAATTACTAAAGGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138115-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=46.4)
A:
NA
C2:
PF0006717=p450=PD(23.1=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCACTCCTCTTCCTATT
R:
AATACACGGTGAACACAGGACC
Band lengths:
112-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)