HsaALTD0001884-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000162777 | DENND2D
Description
DENN/MADD domain containing 2D [Source:HGNC Symbol;Acc:26192]
Coordinates
chr1:111742245-111747018:-
Coord C1 exon
chr1:111746918-111747018
Coord A exon
chr1:111746768-111746917
Coord C2 exon
chr1:111742245-111742420
Length
150 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGGCTCTGGCTTGATTTCAGGAC
3' ss Score
5.88
Exon sequences
Seq C1 exon
GCCAGCGCGGAGCTGGGAGCGGGAGCCGGGCACTCCAGGGGCCATGGATGGGCTCGGCCGCCGCCTTCGAGCCAGCCTGAGACTGAAGCGCGGCCATGGGG
Seq A exon
GTTAGTGCCGGCCGGGGAGAGCGCGGGGGGACGGCGTGGGCACCGGGGAGCCGGGGCTAGGGCTGGCGGCTGGGGCCCGGTGGAGGGCGGCACGGGGCGTCGAGATCCGGGAGCAGTTGGAAGGGGACTCAGGAGGCTGCGCGGGGGCAG
Seq C2 exon
GACCACCCCAGGACAATTCAGGGGAAGCTTTAAAGGAACCAGAAAGGGCCCAGGAGCACTCTTTGCCCAACTTTGCTGGGGGGCAGCACTTCTTTGAATACCTTCTTGTGGTTTCTCTCAAAAAGAAGCGTTCAGAGGATGATTACGAGCCTATAATCACCTACCAATTTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162777-0-5,1-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=0.349
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0345613=uDENN=PU(12.7=15.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAGGGGCCATGGATG
R:
TGGGAAATTGGTAGGTGATTATAGGC
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)