HsaALTD0002005-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000115325 | DOK1
Description
docking protein 1, 62kDa (downstream of tyrosine kinase 1) [Source:HGNC Symbol;Acc:2990]
Coordinates
chr2:74781921-74782358:+
Coord C1 exon
chr2:74781921-74781941
Coord A exon
chr2:74781942-74781986
Coord C2 exon
chr2:74782283-74782358
Length
45 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
CTCTCTCTCTCTCCCTAGAGGTG
3' ss Score
4.87
Exon sequences
Seq C1 exon
AGTCAGCGCTTTGGGACCAAG
Seq A exon
GTAGTCTGGCGCATGGATGCCGAACCTTATCCGGGCTAGTAGTGG
Seq C2 exon
GTGGAGGAAGACCTGGGCCGTGCTCTACCCGGCCAGTCCCCACGGCGTAGCGCGGCTCGAGTTCTTTGACCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115325-3-12,4-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.9=80.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCGCTTTGGGACCAAG
R:
ATGGTCAAAGAACTCGAGCCG
Band lengths:
93-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)