HsaALTD0002518-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000119402 | FBXW2
Description
F-box and WD repeat domain containing 2 [Source:HGNC Symbol;Acc:13608]
Coordinates
chr9:123555427-123555738:-
Coord C1 exon
chr9:123555638-123555738
Coord A exon
chr9:123555632-123555637
Coord C2 exon
chr9:123555427-123555535
Length
6 bp
Sequences
Splice sites
5' ss Seq
CGGGTCTGT
5' ss Score
3.55
3' ss Seq
CTGTTTTTCTTTCCCTGCAGGCG
3' ss Score
13.81
Exon sequences
Seq C1 exon
TTCCGCCGGGAGCCGCGGAGCTGAGGGACGCGCGGAGATGACGCAGGCAGCACCGGAAGCCGCTCCCCTGTGAGGCTGCGGACCGGGAGCAGCGGCCGCAG
Seq A exon
GTCCGG
Seq C2 exon
GCGCCATGGCTGCGGAGCGGACCCGGCCGCTGCAAGGCTCTGGCGGTCCGAGCGTGCCTAGTAGCTGTGAACCCGGCGCGAGGTCCCGGGCCCCGGGGCGCTCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119402-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGAGGCTGCGGACC
R:
GGTTCACAGCTACTAGGCACG
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)