HsaALTD0002669-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000176920 | FUT2
Description
fucosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:4013]
Coordinates
chr19:48695979-48703616:+
Coord C1 exon
chr19:48695979-48696079
Coord A exon
NA
Coord C2 exon
chr19:48702955-48703616
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCGTTTTCCTCCCCTGACAGCCA
3' ss Score
9.6
Exon sequences
Seq C1 exon
ATGCTGGAAGGGTTTCTTTGGCCCTGAGTGAAGAGAGACCCAGAGGGAACACTGAGGTGCCTGCCCAACCACTCTGTCCCGGTTTCCTTCAGCAGGACCAG
Seq A exon
NA
Seq C2 exon
CCATGCTGGTCGTTCAGATGCCTTTCTCCTTTCCCATGGCCCACTTCATCCTCTTTGTCTTTACGGTTTCCACTATATTTCACGTTCAGCAGCGGCTAGCGAAGATTCAAGCCATGTGGGAGTTACCGGTGCAGATACCAGTGCTAGCCTCAACATCAAAGGCACTGGGACCCAGCCAGCTCAGGGGGATGTGGACGATCAATGCAATAGGCCGCCTGGGGAACCAGATGGGCGAGTACGCCACACTGTACGCCCTGGCCAAGATGAACGGGCGGCCCGCCTTCATCCCGGCCCAGATGCACAGCACCCTGGCCCCCATCTTCAGAATCACCCTGCCGGTGCTGCACAGCGCCACGGCCAGCAGGATCCCCTGGCAGAACTACCACCTGAACGACTGGATGGAGGAGGAATACCGCCACATCCCGGGGGAGTACGTCCGCTTCACCGGCTACCCCTGCTCCTGGACCTTCTACCACCACCTCCGCCAGGAGATCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176920-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0153111=Glyco_transf_11=WD(100=91.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCTGAGTGAAGAGAGAC
R:
AAAGGCATCTGAACGACCAGC
Band lengths:
108-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development