HsaALTD0002697-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000144278 | GALNT13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) [Source:HGNC Symbol;Acc:23242]
Coordinates
chr2:154728589-154757520:+
Coord C1 exon
chr2:154728589-154728689
Coord A exon
chr2:154728690-154728816
Coord C2 exon
chr2:154757449-154757520
Length
127 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTCC
5' ss Score
0.85
3' ss Seq
GATTTTTTCTTCCTCCACAGATG
3' ss Score
12.23
Exon sequences
Seq C1 exon
GGCTGGAGCCGGCTCCCTCTGCTCGCGGGCAAGTGTGAAGAGAGAGGCGCGGGCGGGAGCCGGGGCTGCGCGCGGCGCTCGCGGGCCGGCGCGGGTTCCAG
Seq A exon
GTGAGCGCGGACTCGGCGAGCCCCGCACTCGGCGCGGCCGGCCGGCGCCTGCTGGGCTTGATCTGAGGCTGAATCCCGTGTGTGGACCGCCGTTCCCTCTTCGCGGGATCGTTGGCCAGGATAGCAG
Seq C2 exon
ATGCATTTTTGTAGAAGCATTTTGAGGATGAATGTTTGCAAATCATTTTGAAATTGCCAAGTGCCACATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144278-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTCGCGGGCAAGT
R:
GCACTTGGCAATTTCAAAATGAT
Band lengths:
149-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)