HsaALTD0003042-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000156515 | HK1
Description
hexokinase 1 [Source:HGNC Symbol;Acc:4922]
Coordinates
chr10:71042311-71048526:+
Coord C1 exon
chr10:71042311-71042406
Coord A exon
chr10:71042407-71042460
Coord C2 exon
chr10:71048427-71048526
Length
54 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTCT
5' ss Score
2.57
3' ss Seq
TGAACTTGGCCTTTCTCTAGGCG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTTCCCCAGAGCATTGTTCCTGAGAAGGAAAAGAGTCCAAACACCTACCCACACCTGCTTTGTGCCAAGAATCCACAGTTGGATTGCAAGGACAGT
Seq A exon
GTATGTTGTCCTTTTGGAAAAATGAGAGTGAGCCCAAATGAAGAACAAGCAAAG
Seq C2 exon
GCGTTCAAGACCCAGCTGTTGAGAGTAGAAAAGCAGAAGAAAGGACCCGAGGTCAGCAAGTGCCCTCCCCACAATGGGGCAGATCTGCCAGCGAGAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156515-3-6,4-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.397
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTGCTTTGTGCCAAGAA
R:
CGATTCTCGCTGGCAGATCTG
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)