HsaALTD0003042-4/5 @ hg38
Alternative 5'ss
Gene
ENSG00000156515 | HK1
Description
hexokinase 1 [Source:HGNC Symbol;Acc:HGNC:4922]
Coordinates
chr10:69282555-69288770:+
Coord C1 exon
chr10:69282555-69282650
Coord A exon
chr10:69282651-69282724
Coord C2 exon
chr10:69288671-69288770
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAGGCAACT
5' ss Score
1.26
3' ss Seq
TGAACTTGGCCTTTCTCTAGGCG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTTCCCCAGAGCATTGTTCCTGAGAAGGAAAAGAGTCCAAACACCTACCCACACCTGCTTTGTGCCAAGAATCCACAGTTGGATTGCAAGGACAGT
Seq A exon
GTATGTTGTCCTTTTGGAAAAATGAGAGTGAGCCCAAATGAAGAACAAGCAAAGGTGTCTCAAGTCATCCCAAG
Seq C2 exon
GCGTTCAAGACCCAGCTGTTGAGAGTAGAAAAGCAGAAGAAAGGACCCGAGGTCAGCAAGTGCCCTCCCCACAATGGGGCAGATCTGCCAGCGAGAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156515-6-9,7-9,8-9,9-9,10-9-4/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.444
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAGAGCATTGTTCCTGA
R:
CATTGTGGGGAGGGCACTTG
Band lengths:
170-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains