HsaALTD0003081-2/3 @ hg19
Alternative 5'ss
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Coordinates
chr2:178081404-178082573:+
Coord C1 exon
chr2:178081404-178081463
Coord A exon
chr2:178081464-178081478
Coord C2 exon
chr2:178082529-178082573
Length
15 bp
Sequences
Splice sites
5' ss Seq
GTGGTGGAA
5' ss Score
-7.76
3' ss Seq
AGGTGGTGGATATGGTGGAGGTG
3' ss Score
-7.93
Exon sequences
Seq C1 exon
GTCGTGGAGGTGGATCTGGCAATTTTATGGGTCGCGGAGGGAACTTTGGAGGTGGTGGAG
Seq A exon
GTAATTTTGGCCGTG
Seq C2 exon
GTGGAGGATATGATGGTTACAATGAAGGAGGAAATTTTGGCGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144-8-13,9-13,10-13-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.580 A=NA C2=0.396
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGTGGATCTGGCAATT
R:
CACCGCCAAAATTTCCTCCTT
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)