HsaALTD0003350-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000115221 | ITGB6
Description
integrin subunit beta 6 [Source:HGNC Symbol;Acc:HGNC:6161]
Coordinates
chr2:160195369-160196420:-
Coord C1 exon
chr2:160196389-160196420
Coord A exon
NA
Coord C2 exon
chr2:160195369-160195615
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
TTTCCTGTTGGGCTTTGCAGGTG
3' ss Score
9.99
Exon sequences
Seq C1 exon
AATTTTACTCATCCATCTGGAGTTGGCGAAAG
Seq A exon
NA
Seq C2 exon
GTGGTGCGCAGACTCTGCAGGTGCATGTCCGCCAGACTGAGGACTACCCGGTGGATTTGTATTACCTCATGGACCTCTCCGCCTCCATGGATGACGACCTCAACACAATAAAGGAGCTGGGCTCCCGGCTTTCCAAAGAGATGTCTAAATTAACCAGCAACTTTAGACTGGGCTTCGGATCTTTTGTGGAAAAACCTGTATCCCCTTTTGTGAAAACAACACCAGAAGAAATTGCCAACCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115221-23-24,24-24-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(26.3=100)
A:
NA
C2:
PF0036213=Integrin_beta=PD(23.7=64.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCTGGAGTTGGCGAAAG
R:
TGGTGTTGTTTTCACAAAAGGGG
Band lengths:
245-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development