HsaALTD0003509-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000164344 | KLKB1
Description
kallikrein B, plasma (Fletcher factor) 1 [Source:HGNC Symbol;Acc:6371]
Coordinates
chr4:187171397-187172482:+
Coord C1 exon
chr4:187171397-187171556
Coord A exon
chr4:187171557-187171587
Coord C2 exon
chr4:187172373-187172482
Length
31 bp
Sequences
Splice sites
5' ss Seq
AAGGCGAGT
5' ss Score
2.72
3' ss Seq
CTTTTTTTTAAAAAAAATAGAAA
3' ss Score
2.69
Exon sequences
Seq C1 exon
GTTGCCACATGAACATCTTCCAGCATCTTGCGTTCTCAGATGTGGATGTTGCCAGGGTTCTCACTCCAGATGCTTTTGTGTGTCGGACCATCTGCACCTATCACCCCAACTGCCTCTTCTTTACATTCTATACAAATGTATGGAAAATCGAGTCACAAAG
Seq A exon
GCGAGTATGCATGGAAAATCGCATCACAAAG
Seq C2 exon
AAATGTTTGTCTTCTTAAAACATCTGAAAGTGGCACACCAAGTTCCTCTACTCCTCAAGAAAACACCATATCTGGATATAGCCTTTTAACCTGCAAAAGAACTTTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164344-13-17,14-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.132
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
NA
C2:
PF0002421=PAN_1=PD(36.9=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGGACCATCTGCACCTAT
R:
TGGTGTGCCACTTTCAGATGT
Band lengths:
120-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)