HsaALTD0003536-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000112769 | LAMA4
Description
laminin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6484]
Coordinates
chr6:112253956-112254485:-
Coord C1 exon
chr6:112254459-112254485
Coord A exon
chr6:112254442-112254458
Coord C2 exon
chr6:112253956-112254291
Length
17 bp
Sequences
Splice sites
5' ss Seq
TCTGTAGGT
5' ss Score
2.49
3' ss Seq
CTTTCCCTTTATTTCCTAAGCTG
3' ss Score
6.36
Exon sequences
Seq C1 exon
AATCCGTCTGCCTTTTGATGCCGTACT
Seq A exon
GTAAGCTCCGTCCATCT
Seq C2 exon
CTGCTGGTTGCGCAGCCACCTCGGGATACTGCACACGGAGAGGAGGGAAAATAAGCGAGGCACCGCCGCACCACGCGGGAGACCTACGGAGACCCACAGCGCCCGAGCCCTGGAAGAGCACTACTGGATGTCAGCGGAGAAATGGCTTTGAGCTCAGCCTGGCGCTCGGTTCTGCCTCTGTGGCTCCTCTGGAGCGCTGCCTGCTCCCGCGCCGCGTCCGGGGACGACAACGCTTTTCCTTTTGACATTGAAGGGAGCTCAGCGGTTGGCAGGCAAGACCCGCCTGAGACGAGCGAACCCCGCGTGGCTCTGGGACGCCTGCCGCCTGCGGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112769-2-10,3-10,4-10-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.315
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGCCTTTTGATGCCGTA
R:
TAGGTCTCCCGCGTGGTG
Band lengths:
109-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development