HsaALTD0003777-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000136536 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17393]
Coordinates
chr2:160569017-160585686:+
Coord C1 exon
chr2:160569017-160569117
Coord A exon
NA
Coord C2 exon
chr2:160585520-160585686
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGCGT
5' ss Score
8.66
3' ss Seq
TGAAAATTTTTATTTCACAGAAA
3' ss Score
8.21
Exon sequences
Seq C1 exon
GGTTCTGCGCCGGATCCGGGAGAGGGGCGGGCGCCATTGTGCTTCGCTGCCGACTGCATTTCCTCAGTCACGGGCCTAGAACTCCAAGGAGAAAGGCGGCG
Seq A exon
NA
Seq C2 exon
AAAAATCTTTAAGAATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAATTTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCTATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136536-0-4,1-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACTGCATTTCCTCAGTC
R:
GCACTTAAGGAGCTGGAAGGT
Band lengths:
132-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)