HsaALTD0003778-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000136536 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17393]
Coordinates
chr2:160615803-160619504:+
Coord C1 exon
chr2:160615803-160615846
Coord A exon
NA
Coord C2 exon
chr2:160619391-160619504
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTTAGT
5' ss Score
4.22
3' ss Seq
TGTTTGCTTCCCTGTTGAAGGCT
3' ss Score
6.61
Exon sequences
Seq C1 exon
ATTTTGATATTCATGAACTACATAGAGCTCATGCAAATGAACAA
Seq A exon
NA
Seq C2 exon
GCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTGGTGTTATTGCACTTGTGCGAACAAAGCTTTTCTGATATGATGGGAAATACAAATGAACCAAGCACACGTGTCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136536-15-14,16-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF129062=RINGv=PD(21.4=32.4)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGAACTACATAGAGCTCATGCA
R:
TCAGAAAAGCTTTGTTCGCACA
Band lengths:
108-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)