HsaALTD0003863-2/3 @ hg19
Alternative 5'ss
Gene
ENSG00000148297 | MED22
Description
mediator complex subunit 22 [Source:HGNC Symbol;Acc:11477]
Coordinates
chr9:136213395-136214877:-
Coord C1 exon
chr9:136214797-136214877
Coord A exon
chr9:136214777-136214796
Coord C2 exon
chr9:136213395-136213555
Length
20 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGA
5' ss Score
7.63
3' ss Seq
AGGTCTGTGCTGCACTCTAGGTC
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTGGGAGAGACGCGGGAAAGTGCGGGTCGCAGAGGCACTTGACCACCCCGCCCTAGGCCGACCCGGCGGACGCGGCGTCTG
Seq A exon
GTGTGCGGGCGCTGGGGCGG
Seq C2 exon
GTCCCAGGTCTCCCCGCTGCGCTGCTTGAGGCTCAGCCATGGCCCAGCAGAGAGCCCTGCCCCAGAGCAAGGAGACGCTGCTGCAGTCCTACAACAAGCGGCTGAAGGACGACATTAAGTCCATCATGGACAACTTCACCGAGATCATCAAGACCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148297-1-4,2-4,3-4-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.173
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF061797=Med22=PU(23.1=65.9),PF146811=UPRTase=PU(27.8=78.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGACGCGGGAAAGTGC
R:
GGCTGAGCCTCAAGCAGC
Band lengths:
115-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)