HsaALTD0003910-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000204520 | MICA
Description
MHC class I polypeptide-related sequence A [Source:HGNC Symbol;Acc:7090]
Coordinates
chr6:31380102-31380237:+
Coord C1 exon
chr6:31380102-31380157
Coord A exon
NA
Coord C2 exon
chr6:31380162-31380237
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCTGCTGGC
5' ss Score
-23.29
3' ss Seq
TGTTTCTGCTGTTGCTGCTGGCT
3' ss Score
-0.32
Exon sequences
Seq C1 exon
GGAAAGTGCTGGTGCTTCAGAGTCATTGGCAGACATTCCATGTTTCTGCTGTTGCT
Seq A exon
NA
Seq C2 exon
GCTGCTGCTATTTTTGTTATTATTATTTTCTATGTCCGTTGTTGTAAGAAGAAAACATCAGCTGCAGAGGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204520-9-15,10-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCATGTTTCTGCTGTTGCT
R:
GACCCTCTGCAGCTGATGTTT
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)