HsaALTD0004486-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000136811 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr9:128496041-128498575:+
Coord C1 exon
chr9:128496041-128496124
Coord A exon
chr9:128496125-128496297
Coord C2 exon
chr9:128498413-128498575
Length
173 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
GATTGAGTGCTTTCACCTAGGAA
3' ss Score
4.41
Exon sequences
Seq C1 exon
ATCGAACACCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGGCTTCCCAGAAGGAAAATAAACAGCTGAGTCTGAAG
Seq A exon
GTGGATGAACTGGAGAGGTTAGAGGCACTTGGTCCCATCTCTGTCCTCTTCCTAGGACCTGAGACTTTCAGCCACTTAGCTGTTTTTTGCTTAGTGTGCGGAAGTGTTGAGGGACTCGAGGCCCTGGAAGGTACTAGGCAGACCTCAGAGGAAAAGCTGCTTCCATTTCAGTG
Seq C2 exon
GAAACTGGAGGCGACCAGTGCCCAGAATATCGAGTTCCTACAGGTGATTGCCAAGAGGGAGGAGGCAATCCACCAGTCCCAGCTGCGGCTGGAGGAGAAAACACGGGAATGTGGGACCCTGGCAAGGCAGTTGGAGAGTGCCATTGAAGATGCGAGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136811-65-59,66-59,67-59-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.503 A=NA C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAACACCAGGGGGACAAG
R:
TCCTCGCATCTTCAATGGCAC
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains